// Copyright (C) 2009-2012 Conrad Sanderson
// Copyright (C) 2009-2012 NICTA (www.nicta.com.au)
// Copyright (C) 2009-2010 Dimitrios Bouzas
// 
// This Source Code Form is subject to the terms of the Mozilla Public
// License, v. 2.0. If a copy of the MPL was not distributed with this
// file, You can obtain one at http://mozilla.org/MPL/2.0/.


//! \addtogroup glue_cor
//! @{



template<typename eT>
inline
void
glue_cor::direct_cor(Mat<eT>& out, const Mat<eT>& A, const Mat<eT>& B, const uword norm_type)
  {
  arma_extra_debug_sigprint();
  
  if(A.is_empty() || B.is_empty() )
    {
    out.reset();
    return;
    }
  
  if(A.is_vec() && B.is_vec())
    {
    arma_debug_check( (A.n_elem != B.n_elem), "cor(): the number of elements in the two vectors must match" );
    
    const eT* A_ptr = A.memptr();
    const eT* B_ptr = B.memptr();
    
    eT A_acc   = eT(0);
    eT B_acc   = eT(0);
    eT out_acc = eT(0);
    
    const uword N = A.n_elem;
    
    for(uword i=0; i<N; ++i)
      {
      const eT A_tmp = A_ptr[i];
      const eT B_tmp = B_ptr[i];
      
      A_acc += A_tmp;
      B_acc += B_tmp;
      
      out_acc += A_tmp * B_tmp;
      }
    
    out_acc -= (A_acc * B_acc)/eT(N);
    
    const eT norm_val = (norm_type == 0) ? ( (N > 1) ? eT(N-1) : eT(1) ) : eT(N);    
    
    out.set_size(1,1);
    out[0] = out_acc/norm_val;
    
    const Mat<eT> stddev_A = (A.n_rows == 1) ? Mat<eT>(stddev(trans(A))) : Mat<eT>(stddev(A));
    const Mat<eT> stddev_B = (B.n_rows == 1) ? Mat<eT>(stddev(trans(B))) : Mat<eT>(stddev(B));
    
    out /= stddev_A * stddev_B;
    }
  else
    {
    arma_debug_assert_mul_size(A, B, true, false, "cor()");
    
    const uword N = A.n_rows;
    const eT norm_val = (norm_type == 0) ? ( (N > 1) ? eT(N-1) : eT(1) ) : eT(N);
    
    out = trans(A) * B;
    out -= (trans(sum(A)) * sum(B))/eT(N);
    out /= norm_val;
    out /= trans(stddev(A)) * stddev(B);
    }
  }



template<typename T>
inline
void
glue_cor::direct_cor(Mat< std::complex<T> >& out, const Mat< std::complex<T> >& A, const Mat< std::complex<T> >& B, const uword norm_type)
  {
  arma_extra_debug_sigprint();
  
  typedef typename std::complex<T> eT;
  
  if(A.is_empty() || B.is_empty() )
    {
    out.reset();
    return;
    }
  
  if(A.is_vec() && B.is_vec())
    {
    arma_debug_check( (A.n_elem != B.n_elem), "cor(): the number of elements in the two vectors must match" );
    
    const eT* A_ptr = A.memptr();
    const eT* B_ptr = B.memptr();        
    
    eT A_acc   = eT(0);
    eT B_acc   = eT(0);
    eT out_acc = eT(0);
    
    const uword N = A.n_elem;
    
    for(uword i=0; i<N; ++i)
      {
      const eT A_tmp = A_ptr[i];
      const eT B_tmp = B_ptr[i];
      
      A_acc += A_tmp;
      B_acc += B_tmp;
      
      out_acc += std::conj(A_tmp) * B_tmp;
      }
    
    out_acc -= (std::conj(A_acc) * B_acc)/eT(N);
    
    const eT norm_val = (norm_type == 0) ? ( (N > 1) ? eT(N-1) : eT(1) ) : eT(N);
    
    out.set_size(1,1);
    out[0] = out_acc/norm_val;
    
    const Mat<T> stddev_A = (A.n_rows == 1) ? Mat<T>(stddev(trans(A))) : Mat<T>(stddev(A));
    const Mat<T> stddev_B = (B.n_rows == 1) ? Mat<T>(stddev(trans(B))) : Mat<T>(stddev(B));
    
    out /= conv_to< Mat<eT> >::from( stddev_A * stddev_B );
    }
  else
    {
    arma_debug_assert_mul_size(A, B, true, false, "cor()");
    
    const uword N = A.n_rows;
    const eT norm_val = (norm_type == 0) ? ( (N > 1) ? eT(N-1) : eT(1) ) : eT(N);
    
    out = trans(A) * B;                     // out = strans(conj(A)) * B;
    out -= (trans(sum(A)) * sum(B))/eT(N);  // out -= (strans(conj(sum(A))) * sum(B))/eT(N);
    out /= norm_val;
    out /= conv_to< Mat<eT> >::from( trans(stddev(A)) * stddev(B) );
    }
  }



template<typename T1, typename T2>
inline
void
glue_cor::apply(Mat<typename T1::elem_type>& out, const Glue<T1,T2,glue_cor>& X)
  {
  arma_extra_debug_sigprint();
  
  typedef typename T1::elem_type eT;
  
  const unwrap_check<T1> A_tmp(X.A, out);
  const unwrap_check<T2> B_tmp(X.B, out);
  
  const Mat<eT>& A = A_tmp.M;
  const Mat<eT>& B = B_tmp.M;
  
  const uword norm_type = X.aux_uword;
  
  if(&A != &B)
    {
    glue_cor::direct_cor(out, A, B, norm_type);
    }
  else
    {
    op_cor::direct_cor(out, A, norm_type);
    }
  }



//! @}
