100

Santos, S.R., Livable Hawaii Hui, M.N. Yamamoto, T.Y. Iwai Jr., A.W. Tagawa. (in press). South(east) by Southwest: identification of a new Halocaridina rubra Holthuis, 1963 (Decapoda:Atyidae) genetic group from Oahu, Hawaii. Pacific Science. Request Reprint

99

Shishido, C.M., L. Wada, S.R. Santos, A.W. Tagawa, T.Y. Iwai Jr., M.N. Yamamoto, J.H. Browning, A. Nadig. 2021. Pools in Peril: the anchialine ecosystem of the Hawaiian Islands. Imperiled: The Encyclopedia of Conservation Elsevier. Article Link Request Reprint

98

Carpenter, A., W.B. Bryant, S.R. Santos, R.J. Clem. 2021. Aedes aegypti mosquitoes infected with midgut-attenuated Sindbis virus exhibit reduced disseminated infection. Journal of Virology. 95:e00136-21. Request Reprint

97

Glass, J.R., S.R. Santos, J.S.K. Kauwe, B.D. Pickett, T.J. Near. 2021. Phylogeography of two marine predators, giant trevally (Caranx ignobilis) and bluefin trevally (Caranx melampygus), across the Indo-Pacific. Bulletin of Marine Science. 97:257-280. (Featured Article) Request Reprint

96

Clay, M., P.M. Brannock, M. Barbour, J.W. Feminella, S.R. Santos, B.S. Helms. 2020. Strong population structure and differentiation within and among burrowing bog crayfish species of southern Alabama wetlands. Wetlands. 40:1595-1606. Request Reprint

95

Santana-Pereira, A., M. Sandoval-Powers, S. Monsma, J. Zhou, S.R. Santos, D. Mead, M. Liles. 2020. Discovery of novel biosynthetic gene cluster diversity from a soil metagenomic library. Frontiers in Microbiology. 11:585398. Request Reprint

94

Hoffman, S.K., K.W. Seitz, J.C. Havird, D.A. Weese, S.R. Santos. 2020. Invited SICB Symposium Contribution: Phenotypic comparability from genotypic variability among physically structured microbial consortia. Integrative and Comparative Biology. 60:288-303. Request Reprint

93

Erseus, C., B.W. Williams, K.M. Horn, K.M. Halanych, S.R. Santos, S.W. James, M.C. des Chatelliers, F.E. Anderson. 2020. Phylogenomic analyses reveal a Palaeozoic radiation and support a freshwater origin for clitellate annelids. Zoologica Scripta. 49:614-640. Request Reprint

92

Weaver, R.J., B.K. Gonzalez; S.R. Santos, J.C. Havird. 2020. Red coloration in an anchialine shrimp: molecular mechanisms, genetic variation, and candidate genes. The Biological Bulletin. 238:119-130. (Featured Cover Article) Request Reprint

91

Havird, J.C., E. Meyer, Y. Fujita, R.C. Vaught, R.P. Henry, S.R. Santos. 2019. Disparate responses to salinity across species and organizational levels in anchialine shrimps. Journal of Experimental Biology. 222:jeb211920. Request Reprint

90

Horn, K.M., B.W. Williams, C. Erseus, K.M. Halanych, S.R. Santos, M. Creuze des Chatelliers, F.E. Anderson. 2019. Na+/K+-ATPase gene duplications in clitellate annelids are associated with freshwater colonization. Journal of Evolutionary Biology. 32:580-591. Request Reprint

89

Santos, S.R., M.A. Coffroth. 2018. Protist Citation Classics: Revisiting "Genetic Diversity of Symbiotic Dinoflagellates in the Genus Symbiodinium". Protist. 169:784-787. Request Reprint

88

Hoffman, S.K., K.W. Seitz, J.C. Havird, D.A. Weese, S.R. Santos. 2018. Comparing the community structure of Bacteria and micro-Eukarya from the Hawaiian anchialine ecosystem during wet and dry seasons. Aquatic Microbial Ecology. 82:87-104. Request Reprint

87

Brannock, P.M., D.R. Learman, A.R. Mahon, S.R. Santos, K.M. Halanych. 2018. Meiobenthic community composition and biodiversity along a 5500km transect of Western Antarctica, a metabarcoding analysis. Marine Ecology Progress Series. 603:47-60. Request Reprint

86

LaJeunesse, T.C., J.E. Parkinson, P.W. Gabrielson, J.H. Jeong, J.D. Reimer, C.R. Voolstra, S.R. Santos. 2018. Systematic revision of the Symbiodiniaceae highlights the antiquity and diversity of coral endosymbionts. Current Biology. 28:2570-2580. Recommendation on F1000Prime Request Reprint

85

Hoffman, S.K., K.W. Seitz, J.C. Havird, D.A. Weese, S.R. Santos. 2018. Diversity and the environmental drivers of spatial variation in Bacteria and micro-Eukarya communities from the Hawaiian anchialine ecosystem. Hydrobiologia. 806:265-282. Request Reprint

84

Galaska, M.P., C.J. Sands, S.R. Santos, A.R. Mahon, K.M. Halanych. 2017. Crossing the divide: admixture across the Antarctic Polar Front revealed by the brittle star Astrotoma agassizii. The Biological Bulletin. 232:198-211. (Featured Cover Article) Request Reprint

83

Anderson, F.E., B.W. Williams, K.M. Horn, C. Erseus, K.M. Halanych, S.R. Santos, S.W. James. 2017. Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms. BMC Evolutionary Biology. 17:123. Request Reprint Story Blog on BMC Evolutionary Biology Site

82

Thornhill, D.J., E.J. Howells, D.C. Wham, T.D. Steury, S.R. Santos. 2017. Invited Reviews and Syntheses: Population genetics of reef coral endosymbionts (Symbiodinium, Dinophyceae). Molecular Ecology. 26:2640-2659. Request Reprint

81

Costa-Paiva, E.M., N.V. Whelan, D.S. Waits, S.R. Santos, C.G. Schrago, K.M. Halanych. 2017. Discovery and evolution of novel hemerythrin genes in annelid worms. BMC Evolutionary Biology. 17:85. Request Reprint

80

Titus, B.M., M. Daly, J. Macrander, A. Del Rio, S.R. Santos, N.E. Chadwick. 2017. Contrasting abundance and contribution of clonal proliferation to the population structure of the corkscrew sea anemone Bartholomea annulata in the tropical Western Atlantic. Invertebrate Biology. 136:62-74. Request Reprint

79

Li, Y., K.M. Kocot, N.V. Whelan, S.R. Santos, D.S. Waits, D.J. Thornhill, K.M. Halanych. 2017. Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of supermatrix versus multispecies-coalescent and Bayesian-Concordance approaches. Zoologica Scripta. 46:200-213. Request Reprint

78

Galaska, M.P., C.J. Sands, S.R. Santos, A.R. Mahon, and K.M. Halanych. 2017. Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data. Ecology & Evolution. 7:475-485. Request Reprint

77

Havird, J.C., S.R. Santos. 2016. Invited SICB Symposium Contribution: Developmental transcriptomics of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae). Integrative and Comparative Biology. 56:1170-1182. (Featured Cover Article) Request Reprint

76

Havird, J.C., S.R. Santos. 2016. Invited SICB Symposium Contribution: Here we are, but where do we go? A systematic review of crustacean transcriptomic studies from 2014-2015. Integrative and Comparative Biology. 56:1055-1066. Request Reprint

75

Santos, S.R. 2016. Chapter 23: From one to many: the population genetics of cnidarian-Symbiodinium symbioses. Invited book chapter in Springer volume "The Cnidaria, past, present and future. The world of Medusa and her sisters" Eds. Goffredo, S. & Dubinsky, Z. pg. 359-373. Request Reprint

74

Rasmussen-Ivey, C.R., M.J. Hossain, S.E. Odom, J.S. Terhune, W.G. Hemstreet, C.A. Shoemaker, D. Zhang, D. Xu, M.J. Griffin, Y. Liu, M.J. Figueras, S.R. Santos, J.C. Newton, M.R. Liles. 2016. Classification of a hypervirulent Aeromonas hydrophila pathotype responsible for epidemic outbreaks in warm-water fishes. Frontiers in Microbiology. 7:1615. Request Reprint

73

Havird, J.C., R.T. Mitchell, R.P. Henry, S.R. Santos. 2016. Salinity-induced changes in gene expression from anterior and posterior gills of Callinectes sapidus (Crustacea: Portunidae) with implications for crustacean ecological genomics. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 19:34-44. Request Reprint

72

Selkoe, K.A., O.E. Gaggiotti, E.A. Treml, J.L.K. Wren, M.K. Donovan, Hawai'i Reef Connectivity Consortium (Santos, S.R. - among additional authors), R.J. Toonen. 2016. The DNA of coral reef biodiversity - predicting and protecting genetic diversity of reef assemblages. Proceedings of the Royal Society of London B. 283:20160354. Request Reprint

71

Waits, D.S., S.R. Santos, D.J. Thornhill, Y. Li, K.M. Halanych. 2016. Evolution of sulfur binding in hemoglobin in Siboglinidae (Annelida) with special reference to bone-eating worms, Osedax. Journal of Molecular Evolution. 82:219-229. (Featured Cover Article) Request Reprint

70

Justice, J.L., D.A. Weese, S.R. Santos. 2016. Phylogenetic utility, and variability in structure and content, of complete mitochondrial genomes among genetic lineages of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis 1963 (Atyidae:Decapoda). Mitochondrial DNA. 27:2710-2718. Request Reprint

69

Learman, D.R., M.W. Henson, J.C. Thrash, B. Temperton, P.M. Brannock, S.R. Santos, A.R. Mahon, K.M. Halanych. 2016. Biogeochemical and microbial variation across 5500 km of Antarctic surface sediment implicates organic matter as a driver of benthic community structure. Frontiers in Microbiology. 7:284. Request Reprint

68

Weese, D.A., Y. Fujita, S.R. Santos. 2016. Looking for needles in a haystack: Molecular identification of anchialine crustacean larvae from the Shiokawa Spring, Okinawa, Japan. Journal of Crustacean Biology. 36:61-67. Request Reprint

67

Havird, J.C., R.C. Vaught, D.A. Weese, S.R. Santos. 2015. Reproduction and development in Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae) clarifies larval ecology in the Hawaiian anchialine ecosystem. The Biological Bulletin. 229:134-142. Request Reprint

66

Helms, B.S., R.C. Vaught, S.K. Suciu, S.R. Santos. 2015. Cryptic diversity within two endemic crayfish species of the Southeastern US revealed by molecular genetics and geometric morphometrics. Hydrobiologia. 755:283-298. (Featured Cover Article) Request Reprint

65

Havird, J.C., K.M. Kocot, P.M. Brannock, J.T. Cannon, D.S. Waits, D.A. Weese, S.R. Santos, K.M. Halanych. 2015. Reconstruction of cyclooxygenase evolution in animals suggests variable, lineage-specific duplications and homologs with low sequence identity. Journal of Molecular Evolution. 80:193-208. Request Reprint

64

Li, Y., K.M. Kocot, C. Schander, S.R. Santos, D.J. Thornhill, K.M. Halanych. 2015. Mitogenomics reveals phylogeny and dramatic size variations of control regions in the deep-sea family Siboglinidae (Annelida). Molecular Phylogenetics and Evolution. 85:221-229. Request Reprint

63

Whelan, N.V., K.M. Kocot, S.R. Santos, K.M. Halanych. 2014. Nemertean toxin genes revealed through transcriptome sequencing. Genome Biology and Evolution. 6:3314-3325. Request Reprint

62

Cannon, J.T., K.M. Kocot, D.S. Waits, D.A. Weese, B.J. Swalla, S.R. Santos, K.M. Halanych. 2014. Phylogenomic resolution of the hemichordate and echinoderm clade. Current Biology. 24:2827-2832. Request Reprint

61

Havird, J.C., R.C. Vaught, J.R. Weeks, Y. Fujita, M. Hidaka, S.R. Santos, R.P. Henry. 2014. Taking their breath away: Metabolic responses to low-oxygen levels in anchialine shrimps (Crustacea: Atyidae and Alpheidae). Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 178:109-120. Request Reprint

60

Santos, S.R. 2014. Invited Contribution: News and Views: Perspective: Expanding the population genetic perspective of cnidarian-Symbiodinium symbioses. Molecular Ecology. 23:4185-4187. Request Reprint

59

Havird, J.C., S.R. Santos. 2014. Genomic Resources Note: Transcriptomic resources for five shrimp (Crustacea: Atyidae and Alpheidae) species from the anchialine ecosystem. Molecular Ecology Resources. 14:1322. Request Reprint

58

Vaught, R.C., J.C. Havird, S.R. Santos. 2014. Genetic lineage and environmental conditions as drivers of chromatosome variation in the anchialine shrimp Halocaridina rubra Holthuis 1963 (Atyidae:Decapoda). Journal of Crustacean Biology. 34:647-657. Request Reprint

57

Havird, J.C., S.R. Santos, R.P. Henry. 2014. Osmoregulation in the Hawaiian anchialine shrimp Halocaridina rubra (Crustacea: Atyidae): expression of ion transporters, mitochondria-rich cell proliferation, and hemolymph osmolality during salinity transfers. Journal of Experimental Biology. 217:2309-2320. Request Reprint

56

Weigert, A., C. Helm, M. Meyer, B. Nickel, D. Arendt, B. Hausdorf, S.R. Santos, K.M. Halanych, G. Purschke, C. Bleidorn, T.H. Struck. 2014. Illuminating the base of the annelid tree using transcriptomics. Molecular Biology and Evolution. 31:1391-1401. Request Reprint

55

Santos, S.R. 2014. Genomic Resources Note: Complete mitochondrial and partial nuclear genomes for the jack species Caranx ignobilis (Forsskal, 1775) and C. melampygus (Cuvier, 1833) (Perciformes:Carangidae) from the High Hawaiian Islands. Molecular Ecology Resources. 14:435-436. Request Reprint

54

Havird, J.C., S.R. Santos. 2014. Performance of single and concatenated sets of mitochondrial genes at inferring metazoan relationships relative to full mitogenome data. PLoS One. 9:e84080. Download article directly from PLoS One website

53

GIGA Community of Scientists (Santos, S.R. - among additional authors). 2014. The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. Journal of Heredity. 105:1-18. (Featured Cover Article) Editor's Pick Jan. 2014: Request Reprint

52

Kirk, N.L., R. Ritson-Williams, M.A. Coffroth, M.W. Miller, N.D. Fogarty, S.R. Santos. 2013. Tracking transmission of apicomplexan symbionts in diverse Caribbean corals. PLoS One. 8:e80618. Download article directly from PLoS One website

51

Weese, D.A., Y. Fujita, S.R. Santos. 2013. Multiple colonizations lead to cryptic biodiversity in an island ecosystem: comparative phylogeography of anchialine shrimp species in the Ryukyu Archipelago, Japan. The Biological Bulletin 225:24-41. (Featured Cover Article) Editor's Pick Sept. 2013: Free Download from Biol. Bull.

50

Thornhill, D.J., Y. Xiang, D.T. Pettay, M. Zhong, S.R. Santos. 2013. Population genetic data of a model symbiotic cnidarian system reveal remarkable symbiotic specificity and vectored introductions across ocean basins. Molecular Ecology 22:4499-4515. (Featured Perspectives article by Christian R. Voolstra) Request Reprint

49

Havird, J.C. J.R. Weeks, S. Hau, S.R. Santos. 2013. Invasive fishes in the Hawaiian anchialine ecosystem: investigating potential predator avoidance by endemic organisms. Hydrobiologia 716:189-201. (Featured Cover Article) Request Reprint

48

Kirk, N.L., D.J. Thornhill, D.W. Kemp, W.K. Fitt, S.R. Santos. 2013. Ubiquitous associations and a peak fall prevalence between apicomplexan symbionts and reef corals in Florida and the Bahamas. Coral Reefs 32:847-858. Request Reprint

47

Phillips, M.J., T.J. Page, M. de Bruyn, J.A. Huey, W.F. Humphreys, J.M. Hughes, S.R. Santos, D.J. Schmidt, J.M. Waters. 2013. The linking of plate tectonics and evolutionary divergences (Reply to Bauza-Ribot et al.). Current Biology 23:R603-R605. Request Reprint

46

Weese, D.A., Y. Fujita, M. Hidaka, S.R. Santos. 2012. The long and short of it: Genetic variation and population structure of the anchialine atyid shrimp Caridina rubella on Miyako-jima, Japan. Journal of Crustacean Biology 32:109-117. Request Reprint

45

Kocot, K.M., J.T. Cannon, C. Todt, M.R. Citarella, A.B. Kohn, A.Meyer, S.R. Santos, C. Schander, L.L. Moroz, B. Lieb, K.M. Halanych. 2011. Phylogenomics reveals deep molluscan relationships. Nature. 477:452-457. Download article directly from Nature website

44

Stephens, J.D., S.R. Santos, D.R. Folkerts. 2011. Genetic differentiation, structure, and a transition zone among populations of the pitcher plant moth Exyra semicrocea: Implications for conservation. PLoS One. 6:e22658. Download article directly from PLoS One website

43

Roopin, M., D.J. Thornhill, S.R. Santos, N.E. Chadwick. 2011. Ammonia flux, physiological parameters, and Symbiodinium diversity in the anemonefish symbiosis on Red Sea coral reefs. Symbiosis. 53:63-74. (Featured Cover Article) Request Reprint

42

Santos, S.R., D.A. Weese. 2011. Invited Contribution: Rocks and Clocks: Linking geologic history and rates of genetic differentiation in anchialine organisms. Hydrobiologia. 677:54-63. Request Reprint

41

Santos, S.R., Y. Xiang, A.W. Tagawa. 2011. Population structure and comparative phylogeography of jack species (Caranx ignobilis and C. melampygus) in the high Hawaiian Islands. Journal of Heredity. 102:47-54. PDF Supplementary Materials Raising Islands feature by Jan TenBruggencate

40

Thornhill, D.J., K. Doubleday, D.W. Kemp, S.R. Santos. 2010. Host hybridization alters specificity of cnidarian-dinoflagellate associations. Marine Ecology Progress Series. 420:113-123. Request Reprint

39

Betancur-R, R., A. Acero P., H. Duque-Caro, S.R. Santos. 2010. Phylogenetic and morphologic analyses of a coastal fish reveals a marine biogeographic break of terrestrial origin in the southern Caribbean. PLoS One. 5:e11566. Download article directly from PLoS One website

38

Russ, A., S.R. Santos, C. Muir. 2010. Genetic population structure of an anchialine shrimp, Metabetaeus lohena (Crustacea: Alpheidae), in the Hawaiian Islands. Revista de Biologia Tropical. 58:159-170. PDF

37

Santos, S.R., J. Toyoshima, R.A. Kinzie III. 2009. Invited Contribution: Spatial and temporal dynamics of symbiotic dinoflagellates (Symbiodinium:Dinophyta) in the perforate coral Montipora capitata. Galaxea JCRS. 11:139-147. PDF

36

Thornhill, D.J., Y. Xiang, W.K. Fitt, S.R. Santos. 2009. Reef endemism, host specificity and temporal stability in populations of symbiotic dinoflagellates from two ecologically dominant Caribbean corals. PLoS One. 4:e6262. Featured Weekly Image in EveryOne, the PLoS One Community Blog Download article directly from PLoS One website

35

Cummings, S.P., P. Gyaneshwar, P. Vinuesa, F.T. Farruggia, M. Andrews, D. Humphry, G.N. Elliott, A. Nelson, C. Orr, D. Pettitt, G.R. Shah, S.R. Santos, H.B. Krishnan, D. Odee, F.M.S. Moreira, J.I. Sprent, J.P.W. Young, E.K. James. 2009. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11:2510-2525. PDF

34

Kirk, N.L., J.P Andras, C.D Harvell, S.R Santos, M.A. Coffroth. 2009. Population structure of Symbiodinium sp. associated with the common sea fan, Gorgonia ventalina, in the Florida Keys across distance, depth, and time. Marine Biology. 156:1609-1623. Request Reprint  Supplementary Materials at Marine Biology Website

33

Boyd, R.S., M.A. Wall, S.R. Santos, M.A. Davis. 2009. Variation of morphology and elemental concentrations in the California nickel hyperaccumulator Streptanthus polygaloides (Brassicaceae). Northeastern Naturalist. 16:21-38. Request Reprint

32

Weese, D.A., S.R. Santos. 2009. Genetic identification of source populations for an aquarium-traded invertebrate. Animal Conservation. 12:13-19. (Featured Cover Article) Request Reprint

31

Kocot, K.M., S.R. Santos. 2009. Secondary structural modeling of the second internal transcribed spacer (ITS2) from Pfiesteria-like dinoflagellates (Dinophyceae). Harmful Algae. 8:441-446. PDF  Supplementary Materials

30

Thornhill, D.J., K.T. Fielman, S.R. Santos, K.M. Halanych. 2008. Siboglinid-bacteria endosymbiosis: A model system for studying symbiotic mechanisms. Communicative & Integrative Biology. 1:1-4.  PDF

29

Craft, J.D., A.D. Russ, M.N. Yamamoto, T.Y. Iwai Jr., S. Hau, J. Kahiapo, C.T. Chong, S. Ziegler-Chong, C. Muir, Y. Fujita, D.A. Polhemus, R.A. Kinzie III, S.R. Santos. 2008. Islands under islands: The phylogeography and evolution of Halocaridina rubra Holthuis, 1963 (Crustacean: Decapoda: Atyidae) in the Hawaiian archipelago. Limnology and Oceanography. 53:675-689.  PDF  Supplementary Material #1  Supplementary Material #2

28

Thornhill, D.J., T.C. LaJeunesse, S.R. Santos. 2007. Measuring rDNA diversity in eukaryotic microbial systems: How intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Molecular Ecology. 16:5326-5340.  PDF  Supplementary Materials  Download datasets

27

Ivey, J.L., S.R. Santos. 2007. The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae). Gene. 394:35-44. PDF  View genome  Download datasets

26

Hunter, R.L., T.C. LaJeunesse, S.R. Santos. 2007. Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta). Journal of Phycology. 43:120-128. PDF  Supplementary Materials  Download datasets

25

Kuguru, B., G. Winters, S. Beer, S.R. Santos, N.E. Chadwick. 2007. Adaptation strategies of the corallimorpharian Rhodactis rhodostoma to irradiance and temperature. Marine Biology. 151:1287-1298. PDF

24

Humphry, D.R., M. Andrews, S.R. Santos, E.K. James, L.V. Vinogradova, L. Perin, V.M. Reis, S.P. Cummings. 2007. Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia. Antonie van Leeuwenhoek. 91:105-113. PDF

23

Cummings, S.P., D.R. Humphry, S.R. Santos, M. Andrews, E.K. James. 2006. The potential and pitfalls of exploiting nitrogen fixing bacteria in agricultural soils as a substitute for inorganic fertiliser. Environmental Biotechnology. 2:1-10. PDF

22

Coffroth, M.A., C.F. Lewis, S.R. Santos, J.L. Weaver. 2006. Environmental populations of the symbiotic dinoflagellate, Symbiodinium (Freudenthal), can initiate symbioses with reef cnidarians. Current Biology. 16:R985-R987. PDF  Supplementary Materials

21

Santos, S.R. 2006. Patterns of genetic connectivity among anchialine habitats: a case study of the endemic Hawaiian shrimp Halocaridina rubra on the Island of Hawaii. Molecular Ecology. 15:2699-2718. PDF

20

Moran, N.A., P.H. Degan, S.R. Santos, H.E. Dunbar, H. Ochman. 2005. The players in a mutualistic symbiosis: Insects, bacteria, viruses and virulence genes. Proceedings of the National Academy of Sciences USA. 102:16919-16926. PDF  Supporting data set

19

Coffroth, M.A., S.R. Santos. 2005. Invited Review: Genetic diversity of symbiotic dinoflagellates in the genus Symbiodinium. Protist. 156:19-34. PDF

18

Ochman, H., S.R. Santos. 2005. Exploring microbial microevolution with microarrays. Infection, Genetics and Evolution. 5:103-108. PDF

17

Santos, S.R., H. Ochman. 2004. Identification and phylogenetic sorting of bacterial lineages using universally conserved genes and proteins. Environmental Microbiology. 6:754-759.PDF  Download datasets

16

Santos, S.R. 2004. Comments on the article of Gou et al. (2003, J. Exp. Mar. Biol. Ecol. 296, 135-144): Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China. Journal of Phycology. 40:395-397. PDF

15

Takabayashi, M., S.R. Santos, C.B. Cook. 2004. Mitochondrial DNA phylogeny of the symbiotic dinoflagellates (Symbiodinium, Dinophyta). Journal of Phycology. 40:160-164. PDF

14

Santos, S.R., T.L. Shearer, A.R. Hannes, M.A. Coffroth. 2004. Fine-scale diversity and specificity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) of the Caribbean. Molecular Ecology. 13:459-469. PDF

13

Francino, M.P., S.R. Santos, H. Ochman. 2003. Phylogenetic Relationships of Bacteria with Special Reference to Endosymbionts and Enteric Species. For: M. Dworkin (Editor-in-Chief), The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd edition, release 3.13, May 12, 2003. Springer-Verlag, New York.

12

Santos, S.R., R.A. Kinzie III, K. Sakai, M.A. Coffroth.  2003. Molecular characterization of nuclear small subunit (18S)-rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta). Journal of Eukaryotic Microbiology. 50:417-421. PDF

11

Santos, S.R., C. Gutierrez-Rodriguez, M.A. Coffroth. 2003. Phylogenetic identification of symbiotic dinoflagellates via length heteroplasmy in domain V of chloroplast large subunit (cp23S)-rDNA sequences. Marine Biotechnology. 5:130-140. (Featured Cover Article) PDF

10

Santos, S.R., C. Gutierrez-Rodriguez, H.R. Lasker, M.A. Coffroth. 2003. Symbiodinium sp. associations in the gorgonian Pseudopterogorgia elisabethae in the Bahamas: high levels of genetic variability and population structure in symbiotic dinoflagellates. Marine Biology. 143:111-120. PDF  Supplementary Materials

9

Ochman, H., S.R. Santos. 2003. Eyeing bacterial genomes. Current Opinion in Microbiology. 6:109-113. PDF

8

Santos, S.R., M.A. Coffroth. 2003. Molecular genetic evidence that dinoflagellates belonging to the genus Symbiodinium Freudenthal are haploid. The Biological Bulletin. 204:10-20. (Featured Cover Article) PDF

7

Santos, S.R., D.J. Taylor, R.A. Kinzie III, K. Sakai, M.A. Coffroth. 2002. Evolution of length variation and heteroplasmy in the chloroplast rDNA of symbiotic dinoflagellates (Symbiodinium, Dinophyta) and a novel insertion in the universal core region of the large subunit rDNA. Phycologia. 41:311-318. (Featured Cover Article) PDF

6

Santos, S.R., D.J. Taylor, R.A. Kinzie III, M. Hidaka, K. Sakai, M.A. Coffroth. 2002. Molecular phylogeny of symbiotic dinoflagellates inferred from partial chloroplast large subunit (23S)-rDNA sequences. Molecular Phylogenetics and Evolution. 23:97-111. PDF

5

Kinzie, R.A. III, M. Takayama, S.R. Santos, M.A. Coffroth. 2001. The adaptive bleaching hypothesis: Experimental tests of critical assumptions. The Biological Bulletin. 200:51-58. PDF

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Coffroth, M.A., S.R. Santos, T.L. Goulet. 2001. Early ontogenetic expression of specificity in a cnidarian-algal symbiosis. Marine Ecology Progress Series. 222:85-96. PDF

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Santos, S.R., D.J. Taylor, M.A. Coffroth. 2001. Genetic comparisons of freshly isolated vs. cultured symbiotic dinoflagellates: Implications for extrapolating to the intact symbiosis. Journal of Phycology. 37:900-912. PDF

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Larned, S.T., S.R. Santos. 2000. Light- and nutrient-limited periphyton in low order streams of Oahu, Hawaii. Hydrobiologia. 432:101-111. PDF

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Santos, S.R. 1995. Ultraviolet radiation: helpful or harmful to growth of  cultured zooxanthellae? In Gulko, D. and Jokiel, P.L. [Eds.] Ultraviolet Radiation and Coral Reefs. HIMB Technical Report No. 41, Hawaii, pp. 165-169. PDF