DATASETS
Tomato Plant Heights
79; 82; 85; 87; 100; 101; 102; 103; 124; 125; 126; 127
F1 Hybrid Population
Morgan(1909) Data
DH population (Huang et al. 1997)
Two inbred lines,
semi-dwarf IR64 and tall Azucena, were crossed to generate an
F$_1$ progeny population. By doubling haploid chromosomes of the
gametes derived the heterozygous F$_1$, a doubled haploid (DH)
population of 123 lines were founded (Huang et al. 1997). Such a
DH population is equivalent to a backcross population because its
marker segregation follows 1:1. With 123 DH lines, Huang et al.
genotyped 135 RFLP and 40 isozyme and RAPD markers, representing a
good coverage of 12 rice chromosomes.
Download: Matlab format Text format
Intercross F2 (Cheverud et al. 1996)
Cheverud et al. (1996) genotyped 75 microsatellite markers in 535 F$_2$ progeny
population derived from two strains, the Large (LG/J) and Small
(SM/J). As an example for segregation tests, we choose seven
markers located on mouse chromosome 1.
Download: Matlab format Text format
QTLs in Poplar Trees
F2 Mouse Data
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Problem 3.1
| n_{ij} | AA | Aa | aa |
| BB | 107 | 20 | 3 |
| Bb | 24 | 175 | 18 |
| bb | 5 | 41 | 93 |
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Problem 3.2
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Problem 3.3
| n_{ij} | AA | Aa | aa |
| BB | 0 | 8 | 113 |
| Bb | 18 | 202 | 27 |
| bb | 18 | 202 | 27 |
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Example 4.1
| n_{ij} | 13 | 14 | 23 | 24 |
| 13 | 24 | 8 | 7 | 1 |
| 14 | 11 | 36 | 4 | 8 |
| 23 | 7 | 0 | 35 | 2 |
| 24 | 2 | 6 | 12 | 37 |
Example 4.2
| marker A | marker B | 13 | 14 | 23 | 24 |
| 13 | 13 | 49 | 3 | 7 | 1 |
| 13 | 14 | 2 | 6 | 0 | 1 |
| 13 | 23 | 1 | 1 | 15 | 1 |
| 13 | 24 | 0 | 1 | 0 | 3 |
| 14 | 13 | 17 | 2 | 3 | 0 |
| 14 | 14 | 6 | 64 | 4 | 9 |
| 14 | 23 | 0 | 0 | 0 | 0 |
| 14 | 24 | 0 | 0 | 2 | 11 |
| 23 | 13 | 13 | 1 | 0 | 1 |
| 23 | 14 | 1 | 1 | 0 | 0 |
| 23 | 23 | 11 | 0 | 53 | 5 |
| 23 | 24 | 0 | 2 | 1 | 11 |
| 24 | 13 | 1 | 0 | 1 | 0 |
| 24 | 14 | 2 | 4 | 0 | 1 |
| 24 | 23 | 1 | 0 | 8 | 2 |
| 24 | 24 | 0 | 6 | 6 | 59 |